as.joint.probs: as.joint.probs

Description Usage Arguments Value Examples

View source: R/as.functions.R

Description

Extract the joint probabilities from a TRONCO model. The return matrix is indexed with rownames/colnames which represent genotype keys - these can be resolved with function keysToNames. It is possible to specify a subset of events to build the matrix, a subset of models if multiple reconstruction have been performed. Also, either the observed or fit probabilities can be extracted.

Usage

1
2
3
4
5
6
as.joint.probs(
  x,
  events = as.events(x),
  models = names(x$model),
  type = "observed"
)

Arguments

x

A TRONCO model.

events

A subset of events as of as.events(x), all by default.

models

A subset of reconstructed models, all by default.

type

observed

Value

The joint probabilities in a TRONCO model.

Examples

1
2
3

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.