as.stages: as.stages
In TRONCO: TRONCO, an R package for TRanslational ONCOlogy

Return the association sample -> stage, if any. Input 'x' should be a TRONCO compliant dataset - see is.compliant.

1	as.stages(x)

`x`	A TRONCO compliant dataset.

A matrix with 1 column annotating stages and rownames as sample IDs.

data(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
as.stages(test_dataset)

TRONCO documentation built on Nov. 8, 2020, 5:51 p.m.

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