inputToTSS-methods: *inputToTSS*
In TSRchitect: Promoter identification from large-scale TSS profiling data
Description
Usage
Arguments
Value
Note
Examples
Description
inputToTSS extracts TSS information from each
attached .bam or .bed file in a tssObject object
Usage
1
2
3
4
inputToTSS(experimentName)
## S4 method for signature 'tssObject'
inputToTSS(experimentName)
Arguments
experimentName
an S4 object of class tssObject with bam files loaded
Value
produces a GRangesList containing separate
GRanges objects for each .bam file contained within
experimentName, placing them them in the returned tssObject.
Note
An example similar to the one provided can be
found in the vignette (/inst/doc/TSRchitect.Rmd).
Examples
1
2
3
load(system.file("extdata", "tssObjectExample.RData",
package="TSRchitect"))
tssObjectExample <- inputToTSS(experimentName=tssObjectExample)
TSRchitect documentation built on Nov. 8, 2020, 8:11 p.m.
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Description Usage Arguments Value Note Examples
Description
inputToTSS extracts TSS information from each
attached .bam or .bed file in a tssObject object
Usage
1 2 3 4 | inputToTSS(experimentName)
## S4 method for signature 'tssObject'
inputToTSS(experimentName)
|
Arguments
experimentName |
an S4 object of class tssObject with bam files loaded |
Value
produces a GRangesList containing separate GRanges objects for each .bam file contained within experimentName, placing them them in the returned tssObject.
Note
An example similar to the one provided can be found in the vignette (/inst/doc/TSRchitect.Rmd).
Examples
1 2 3 | load(system.file("extdata", "tssObjectExample.RData",
package="TSRchitect"))
tssObjectExample <- inputToTSS(experimentName=tssObjectExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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