tssObject: *tssObject*

In TSRchitect: Promoter identification from large-scale TSS profiling data

Description

S4 constructor function for tssObject

Usage

tssObject(
  title = NA,
  bamDataFirstRead = NA,
  bamDataLastRead = NA,
  bedData = NA
)

Arguments

title	'character' A short descriptive title for the experiment. Is set to NA by default.
bamDataFirstRead	'list' the name of a list of GAlignments objects (originating from .bam files) in the workspace. Set to NA by default.
bamDataLastRead	'list' the name of a list of GAlignments objects (originating from paired-read .bam files) in the workspace. Set to NA by default.
bedData	'list' the name of a list of GRanges or Pairs objects (originating from .bed files) in the workspace. Set to NA by default.

Value

a new tssObject is returned to the user's workspace.

Examples

new.tssObj <- tssObject(title="Example")

TSRchitect documentation built on Nov. 8, 2020, 8:11 p.m.