TargetExperiment-summarizePanel: Function to summarize a featurePanel slot at a gene level.

In TarSeqQC: TARgeted SEQuencing Experiment Quality Control

Description

summarizePanel helps the initialization of a TargetExperiment object. Is useful to summarize the featurePanel slot at a gene level, building the genePanel slot.

Usage

summarizePanel(object, BPPARAM = bpparam())

## S4 method for signature 'TargetExperiment'
summarizePanel(object, BPPARAM = bpparam())

Arguments

object	TargetExperiment class object.
BPPARAM	An optional BiocParallelParam instance defining the parallel back-end to be used during evaluation.

Value

TargetExperiment object

Note

see full example in TargetExperiment-class

Author(s)

Gabriela A. Merino [e-mail], Cristobal Fresno [e-mail], Yanina Murua [e-mail], Andrea S. Llera [e-mail] and Elmer A. Fernandez [e-mail]

See Also

TargetExperiment,buildFeaturePanel

Examples

## Loading the TargetExperiment object
data(ampliPanel, package="TarSeqQC")

mySummarizedPanel<-summarizePanel(ampliPanel)

TarSeqQC documentation built on Nov. 8, 2020, 6:03 p.m.