object: A set of two amplicon panels example for use the TarSeqQC R...

Description Format Details Author(s) Source See Also

Description

A non-real dataset containing amplicon sequencing results to test the TarSeqQC package, principally the use of the TargetExperimentList class.

Format

A TargetExperimentList object

Details

bedFile

Bed file containing 29 amplicons and 8 genes in 2 PCR pools.

panels

GRanges obtaining amplicon coverage for two targeted sequencing experiment performed using the same bed file

feature

Character "amplicon" indicating that the analyzed features are amplicon sequences

attribute

Character "coverage"

Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

Source

see TargetExperimentList-class

See Also

Other TargetExperimentList: TargetExperimentList-class, TargetExperimentList, initialize,TargetExperimentList-method


TarSeqQC documentation built on Nov. 8, 2020, 6:03 p.m.