object: A set of two amplicon panels example for use the TarSeqQC R...
In TarSeqQC: TARgeted SEQuencing Experiment Quality Control
Description
Format
Details
Author(s)
Source
See Also
Description
A non-real dataset containing amplicon sequencing results to test the TarSeqQC
package, principally the use of the TargetExperimentList class.
Format
A TargetExperimentList object
Details
- bedFile
Bed file containing 29 amplicons and 8 genes in 2 PCR pools.
- panels
GRanges obtaining amplicon coverage for two targeted sequencing
experiment performed using the same bed file
- feature
Character "amplicon" indicating that the analyzed features
are amplicon sequences
- attribute
Character "coverage"
Author(s)
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno
cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar,
Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez
efernandez@bdmg.com.ar
Source
see TargetExperimentList-class
See Also
Other TargetExperimentList: TargetExperimentList-class,
TargetExperimentList,
initialize,TargetExperimentList-method
TarSeqQC documentation built on Nov. 8, 2020, 6:03 p.m.
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Description Format Details Author(s) Source See Also
Description
A non-real dataset containing amplicon sequencing results to test the TarSeqQC package, principally the use of the TargetExperimentList class.
Format
A TargetExperimentList object
Details
- bedFile
Bed file containing 29 amplicons and 8 genes in 2 PCR pools.
- panels
GRanges obtaining amplicon coverage for two targeted sequencing experiment performed using the same bed file
- feature
Character "amplicon" indicating that the analyzed features are amplicon sequences
- attribute
Character "coverage"
Author(s)
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
Source
see TargetExperimentList-class
See Also
Other TargetExperimentList: TargetExperimentList-class,
TargetExperimentList,
initialize,TargetExperimentList-method
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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