TargetExperimentList-plotPoolPerformance: Plot pool performance of a TargetExperimentList object.
In TarSeqQC: TARgeted SEQuencing Experiment Quality Control

Description Usage Arguments Value Author(s) Examples

plotPoolPerformance plots density and/or box-plot of the analyzed attribute achieved in each PCR pool. These graphics could be displayed together using the ggplot2 geom_violin method.

plotPoolPerformance(object, dens = FALSE, join = FALSE, log = TRUE,
    attributeThres = NULL)

## S4 method for signature 'TargetExperimentList'
plotPoolPerformance(object, dens = FALSE,
    join = FALSE, log = TRUE, attributeThres = NULL)

`object`	TargetExperimentList class object.
`dens`	Logical indicating if density plot should be included
`join`	Logical indicating if boxplot and density function should be plotted together using the ggplot2 geom_violin method. For it uses, dens should be TRUE.
`log`	Logical indicating if the attribute should be considered in log10 scale.
`attributeThres`	Numeric indicating the attribute interval extreme values. It is not a mandatory parameter but if it is specified,then the plots will be colored according to the interval in which falls the attribute median values.

ggplot2 graphics.

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

## Loading the TargetExperimentList object
data(TEList, package="TarSeqQC")
# Attribute boxplot and density plot exploration
g<-plotPoolPerformance(TEList,log=FALSE)
# x11(type="cairo")
if(interactive()){
g
}