myCounts: A pileup matrix example for use the TarSeqQC R package.

In TarSeqQC: TARgeted SEQuencing Experiment Quality Control

Description

The pileup matrix obtained using pileupCounts. It is built on the non-real dataset containing amplicon sequencing results to test the TarSeqQC package.

Format

A data.frame object

Details

pos

genomic positions of the explored features.

seqnames

chromosomes of the explored features.

seq

reference nucleotide corresponding to the genomic position.

A,C,G,T,N

number of nucleotide read.

=

Amount of read nucleotides matching the reference nucleotide.

-

Amount of read deletions.

which_label

feature location.

counts

Total read counts

Author(s)

Gabriela A. Merino [e-mail], Cristobal Fresno [e-mail], Yanina Murua [e-mail], Andrea S. Llera [e-mail] and Elmer A. Fernandez [e-mail]

Source

see TargetExperiment-class

See Also

Other TargetExperiment: TargetExperiment-class, TargetExperiment, ampliPanel2, ampliPanel, initialize

TarSeqQC documentation built on Nov. 8, 2020, 6:03 p.m.