add_annotation: Add information to an annotation data structure

In YAPSA: Yet Another Package for Signature Analysis

Description

Function to iteratively add information to an annotation data structure as needed for HeatmapAnnotation and especially for annotation_exposures_barplot

Usage

add_annotation(
  in_annotation_col,
  in_annotation_df,
  in_attribution_vector,
  in_colour_vector,
  in_name
)

Arguments

in_annotation_col	List, every element of which refers to one layer of annotation List elements are structures corresponding to named colour vectors
in_annotation_df	Data frame, every column of which corresponds to a layer of annotation. It has as many rows as there are samples, every entry in a row corresponding to the attribute the samples has for the corresponding layer of annotation.The factor levels of a column of in_annotation_df correspond to the names of the corresponding element in in_annotation_col
in_attribution_vector	A vector which is going to be cbinded to in_annotatiin_df, carrying the annotation information of the new layer to be added
in_colour_vector	Named vector of colours to be attributed to the new annotation
in_name	Name of the new layer of annotation

Value

A list with entries

• annotation_col: A list as in in_annotation_col but with one additional layer of annotation

• annotation_df: A data frame as in in_annotation_df but with one additional layer of annotation

Examples

 NULL

YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.