compare_SMCs: Compare all strata from different stratifications

In YAPSA: Yet Another Package for Signature Analysis

Description

Compare all strata from different orthogonal stratification axes, i.e. othogonal SMCs by cosine similarity of signature exposures. First calls

• make_strata_df, then

• plot_strata and finally

• make_comparison_matrix

Usage

compare_SMCs(
  in_stratification_lists_list,
  in_signatures_ind_df,
  output_path,
  in_nrect = 5,
  in_attribute = ""
)

Arguments

in_stratification_lists_list	List of lists with entries from different (orthogonal) stratification axes or SMCs
in_signatures_ind_df	A data frame containing meta information about the signatures
output_path	Path to directory where the results, especially the figure produced by corrplot is going to be stored.
in_nrect	Number of clusters in the clustering procedure provided by corrplot
in_attribute	Additional string for the file name where the figure produced by corrplot is going to be stored.

Value

The comparison matrix of cosine similarities.

See Also

plot_strata

make_comparison_matrix

Examples

 NULL

YAPSA documentation built on Nov. 8, 2020, 4:59 p.m.