affy.scalevalue.exprSet: Scale normalization for expreSets

Description Usage Arguments Details Value Author(s)

View source: R/generateExprVal.method.mas.R

Description

Normalizes expression values using the method described in the Affymetrix user manual.

Usage

1
affy.scalevalue.exprSet(eset, sc = 500, analysis="absolute")

Arguments

eset

An ExpressionSet object.

sc

Value at which all arrays will be scaled to.

analysis

Should we do absolute or comparison analysis, although "comparison" is still not implemented.

Details

This is function was implemented from the Affymetrix technical documentation for MAS 5.0. It can be downloaded from the website of the company. Please refer to this document for details.

Value

A normalized ExpressionSet.

Author(s)

Laurent


affy documentation built on Nov. 8, 2020, 8:18 p.m.