plot.ProbeSet: plot a probe set

In affy: Methods for Affymetrix Oligonucleotide Arrays

Description

Plot intensities by probe set.

Usage

## S3 method for class 'ProbeSet'
plot(x, which=c("pm", "mm"), xlab = "probes", type = "l", ylim = NULL, ...)

Arguments

x	a ProbeSet object.
which	get the PM or the MM.
xlab	x-axis label.
type	plot type.
ylim	range of the y-axis.
...	optional arguments to be passed to matplot.

Value

This function is only used for its (graphical) side-effect.

See Also

ProbeSet

Examples

data(SpikeIn)
plot(SpikeIn)

Example output

Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning message:
In read.dcf(con) :
  URL 'http://bioconductor.org/BiocInstaller.dcf': status was 'Couldn't connect to server'

affy documentation built on Nov. 8, 2020, 8:18 p.m.