Files in basecallQC

Working with Illumina Basecalling and Demultiplexing input and output files

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

R/allClasses.R R/processExternalFormats_Functions.R R/processInterOps_Functions.R R/processIlluminaSamplesheets_Functions.R R/FastQCShortRead_Functions.R R/allMethods.R R/tables.R R/plots.R R/reporting.R R/processXMLs_Functions.R vignettes/basecallQC.Rmd

vignettes/imgs/inputDir.jpg

vignettes/imgs/outputDir.jpg

man/reportBCL.Rd man/demuxBarplot.Rd man/interOpsReport.Rd man/summaryDemuxTable.Rd man/basecallQC.Rd man/demuxBoxplot.Rd man/createBCLcommand.Rd man/readlengths.Rd man/passFilterBoxplot.Rd man/summaryConvStatsTable.Rd man/BCL2FastQparams.Rd man/passFilterBar.Rd man/makeFQTable.Rd man/demultiplexMetrics.Rd man/passFilterTileplot.Rd man/validateBCLSheet.Rd man/baseCallMetrics.Rd man/indexlengths.Rd man/createBasemasks.Rd tests/testthat.R

tests/testthat/C9L0AANXX.csv

tests/testthat/CADN3ANXX.csv

tests/testthat/test_Run1.R

tests/testthat/CA7RDANXX.csv

tests/testthat/CAL6PANXX.csv

tests/testthat/test_Run3.R

tests/testthat/CAK02ANXX.csv

tests/testthat/test_Run5.R tests/testthat/test_Run2.R tests/testthat/test_Run4.R

inst/NEWS.Rd

inst/doc/basecallQC.R inst/doc/basecallQC.Rmd

inst/doc/basecallQC.html

inst/extdata/runParameters.xml

inst/extdata/config.ini

inst/extdata/AdapterTrimming.txt

inst/extdata/DemultiplexingStats.xml

inst/extdata/testSS.csv

inst/extdata/FastqSummaryF1L1.txt

inst/extdata/DemuxSummaryF1L1.txt

inst/extdata/ConversionStats.xml

inst/extdata/Runs/170303_D00467_0231_ACAK02ANXX/runParameters.xml

inst/extdata/Runs/170303_D00467_0231_ACAK02ANXX/CAK02ANXX.csv

inst/extdata/Runs/170303_D00467_0230_BCA7RDANXX/runParameters.xml

inst/extdata/Runs/170303_D00467_0230_BCA7RDANXX/CAL7DANXX.csv

inst/extdata/Runs/170222_D00467_0228_ACAL6PANXX/runParameters.xml

inst/extdata/Runs/170222_D00467_0228_ACAL6PANXX/CAL6PANXX.csv

inst/extdata/Runs/170217_D00467_0227_ACADN3ANXX/CADN3ANXX.csv

inst/extdata/Runs/170217_D00467_0227_ACADN3ANXX/runParameters.xml

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX.csv

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/runParameters.xml

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/AdapterTrimming.txt

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/DemultiplexingStats.xml

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/FastqSummaryF1L1.txt

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/DemuxSummaryF1L1.txt

inst/extdata/Runs/161105_D00467_0205_AC9L0AANXX/C9L0AANXX/Stats/ConversionStats.xml

inst/extdata/reportRMDs/basecallqcreport.Rmd

inst/extdata/testSampleSheets/runParameters.xml

inst/extdata/testSampleSheets/ErroneousNewSamplesheet.csv

inst/extdata/testSampleSheets/OldSamplesheet.csv

basecallQC documentation built on Nov. 8, 2020, 8:03 p.m.