indexlengths: Index lengths

In basecallQC: Working with Illumina Basecalling and Demultiplexing input and output files

Description

Index lengths as defined by runParameters.xml

Usage

## S4 method for signature 'BCL2FastQparams'
indexlengths(object)

## S4 method for signature 'BCL2FastQparams'
indexlengths(object = "BCL2FastQparams")

Arguments

object

A BCL2FastQparams object

Value

Index lengths as defined runParameters.xml.

Author(s)

Thomas Carroll

Examples

fileLocations <- system.file("extdata",package="basecallQC")
runXML <- dir(fileLocations,pattern="runParameters.xml",full.names=TRUE)
config <- dir(fileLocations,pattern="config.ini",full.names=TRUE)
bcl2fastqparams <- BCL2FastQparams(runXML,config,runDir=getwd(),verbose=FALSE)
indexlength <- indexlengths(bcl2fastqparams)

basecallQC documentation built on Nov. 8, 2020, 8:03 p.m.