Description Usage Arguments Value Author(s) Examples
Read lengths as defined by runParameters.xml
1 2 3 4 5 | ## S4 method for signature 'BCL2FastQparams'
readlengths(object)
## S4 method for signature 'BCL2FastQparams'
readlengths(object = "BCL2FastQparams")
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object |
A BCL2FastQparams object |
Read lengths as defined runParamaeters.xml
Thomas Carroll
1 2 3 4 5 | fileLocations <- system.file("extdata",package="basecallQC")
runXML <- dir(fileLocations,pattern="runParameters.xml",full.names=TRUE)
config <- dir(fileLocations,pattern="config.ini",full.names=TRUE)
bcl2fastqparams <- BCL2FastQparams(runXML,config,runDir=getwd(),verbose=FALSE)
readlength <- readlengths(bcl2fastqparams)
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