Man pages for basecallQC
Working with Illumina Basecalling and Demultiplexing input and output files

baseCallMetricsGather basecalling metrics from a Run (using Run's...
basecallQCThe basecallQC object and constructor.
BCL2FastQparamsThe Parameters for BCL2FastQparams object.
createBasemasksFunction to create basemasks for basecalling from Illumina...
createBCLcommandFunction to create command for Illumina...
demultiplexMetricsGather demultiplexing metrics from a Run (using Run's...
demuxBarplotBarplot of Illumina demultiplexing statistics.
demuxBoxplotBoxplot of Illumina demultiplexing statistics.
indexlengthsIndex lengths
interOpsReportFunction to parse InterOps files and generate summary reports
makeFQTableGenerate an HTML table linking to per sample summary fastq QC...
passFilterBarBarplot of Illumina basecalling statistics for reads passing...
passFilterBoxplotBoxplot of Illumina basecalling statistics for reads passing...
passFilterTileplotTile plot of Illumina basecalling statistics for reads...
readlengthsRead lengths
reportBCLGenerate basecallQC report
summaryConvStatsTableCreates an HTML table of per sample summary statistics from...
summaryDemuxTableGenerate an HTML table of per sample summary demultiplexing...
validateBCLSheetIllumina sample sheet cleaning and updating for bcl2Fastq...
basecallQC documentation built on Nov. 17, 2017, 9:22 a.m.