baseCallMetrics | Gather basecalling metrics from a Run (using Run's... |
basecallQC | The basecallQC object and constructor. |
BCL2FastQparams | The Parameters for BCL2FastQparams object. |
createBasemasks | Function to create basemasks for basecalling from Illumina... |
createBCLcommand | Function to create command for Illumina... |
demultiplexMetrics | Gather demultiplexing metrics from a Run (using Run's... |
demuxBarplot | Barplot of Illumina demultiplexing statistics. |
demuxBoxplot | Boxplot of Illumina demultiplexing statistics. |
indexlengths | Index lengths |
interOpsReport | Function to parse InterOps files and generate summary reports |
makeFQTable | Generate an HTML table linking to per sample summary fastq QC... |
passFilterBar | Barplot of Illumina basecalling statistics for reads passing... |
passFilterBoxplot | Boxplot of Illumina basecalling statistics for reads passing... |
passFilterTileplot | Tile plot of Illumina basecalling statistics for reads... |
readlengths | Read lengths |
reportBCL | Generate basecallQC report |
summaryConvStatsTable | Creates an HTML table of per sample summary statistics from... |
summaryDemuxTable | Generate an HTML table of per sample summary demultiplexing... |
validateBCLSheet | Illumina sample sheet cleaning and updating for bcl2Fastq... |
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