se_soybean_cn_sub: Normalized and subsetted soybean cotyledon...

Description Usage Format Details References See Also


This dataset contains normalized RNA-sequencing read counts from soybean cotyledon across three time stages of development. Early stage cotyledons were collected four days after planting and were green but closed. Middle stage cotyledons were collected while green and open, soon after the plant generated its first set of unifoliate leaves. Late stage cotyledons were collected immediately after the initiation of yellowing and shrinking. To save on size, this example dataset was generated by obtaining a random subset of 1 out of 10 genes from the original resource.




(1) A DelayedMatrix with 7,332 rows and 10 variables and 1 row per gene. Accessible by assay(se_soybean_cn_sub). (2) A List with 1 list element per treatment group combination and 1 row per gene. Accessible by rowData(se_soybean_cn_sub).


Normalized and subsetted soybean cotyledon SummarizedExperiment object


Brown AV, Hudson KA (2015) Developmental profiling of gene expression in soybean trifoliate leaves and cotyledons. BMC Plant Biol 15:169

See Also

soybean_cn_sub and soybean_cn_sub_metrics

bigPint documentation built on Nov. 8, 2020, 5:07 p.m.