This dataset contains raw RNA-sequencing read counts from a soybean dataset that compared leaves that were exposed to iron-rich (iron -postive) soil conditions versus leaves that were exposed to iron-poor (iron-negative) soil conditions. The data was collected 120 minutes after iron conditions were initiated. To save on size, this example dataset was generated by obtaining a random subset of 1 out of 10 genes from the original resource.
(1) A DelayedMatrix with 5,604 rows and 7 variables and 1 row per
gene. Accessible by
assay(se_soybean_ir_sub). (2) A List with 1
list element per treatment group combination and 1 row per gene.
A data frame with 5,604 rows and 7 variables
Raw and subsetted soybean leaves data SummarizedExperiment object
N.1 iron-negative condition replicate 1 raw read counts
N.2 iron-negative condition replicate 2 raw read counts
N.3 iron-negative condition replicate 3 raw read counts
P.1 iron-positive condition replicate 1 raw read counts
P.2 iron-positive condition replicate 2 raw read counts
P.3 iron-positive condition replicate 3 raw read counts
rowData(se_soybean_ir_sub) list element Structure:
ID gene name
logFC log fold change
logCPM log counts per million
LR likelihood ratio
FDR FDR value
Moran Lauter AN, Graham MA. NCBI SRA bioproject accession: PRJNA318409.
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