soybean_cn_sub: Normalized and subsetted soybean cotyledon data

In bigPint: Big multivariate data plotted interactively

Description

This dataset contains normalized RNA-sequencing read counts from soybean cotyledon across three time stages of development. Early stage cotyledons were collected four days after planting and were green but closed. Middle stage cotyledons were collected while green and open, soon after the plant generated its first set of unifoliate leaves. Late stage cotyledons were collected immediately after the initiation of yellowing and shrinking. To save on size, this example dataset was generated by obtaining a random subset of 1 out of 10 genes from the original resource.

Usage

data(soybean_cn_sub)

Format

A data frame with 7,332 rows and 10 variables. 1 row per gene.

Details

Normalized and subsetted soybean cotyledon data

• ID gene name

• S1.1 early stage replicate 1 normalized read counts

• S1.2 early stage replicate 2 normalized read counts

• S1.3 early stage replicate 3 normalized read counts

• S2.1 middle stage replicate 1 normalized read counts

• S2.2 middle stage replicate 2 normalized read counts

• S2.3 middle stage replicate 3 normalized read counts

• S3.1 late stage replicate 1 normalized read counts

• S3.2 late stage replicate 2 normalized read counts

• S3.3 late stage replicate 3 normalized read counts

References

Brown AV, Hudson KA (2015) Developmental profiling of gene expression in soybean trifoliate leaves and cotyledons. BMC Plant Biol 15:169

See Also

soybean_cn from which this dataset is subsetted

bigPint documentation built on Nov. 8, 2020, 5:07 p.m.