GSEA.Analyze.Sets: GSEA.Analyze.Sets

In canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Description

http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/R-GSEA_Readme

Usage

GSEA.Analyze.Sets(directory,topgs="",non.interactive.run= FALSE,height=12,width=17)

Arguments

directory	directory= fname.Output
topgs	topgs = 20
non.interactive.run	non.interactive.run= FALSE
height	height=16
width	width=16

Value

GSEA.Analyze.Sets

Author(s)

Subramanian, Tamayo, et al. (2005, PNAS 102, 15545-15550) and Mootha, Lindgren, et al. (2003, Nat Genet 34, 267-273)

References

http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Main_Page.

Examples

## Not run: 
## Load workspace
readRDS(paste(path.package("canceR"),"/extdata/rdata/ucec_tcga_pubGSEA1021.rds", sep=""))
##Run.GSEA()

## End(Not run)

canceR documentation built on Nov. 8, 2020, 7:21 p.m.