charm: Analysis of DNA methylation data from CHARM microarrays

This package implements analysis tools for DNA methylation data generated using Nimblegen microarrays and the McrBC protocol. It finds differentially methylated regions between samples, calculates percentage methylation estimates and includes array quality assessment tools.

Getting started

Package details

AuthorMartin Aryee, Peter Murakami, Harris Jaffee, Rafael Irizarry
Bioconductor views DNAMethylation Microarray
MaintainerPeter Murakami <>
LicenseLGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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charm documentation built on May 6, 2019, 2:29 a.m.