Description Usage Arguments Value

Simulate known states, read counts and read coordinates using a multivariate Hidden Markov Model.

1 2 3 4 5 6 7 8 9 10 | ```
simulateMultivariate(
bins,
transition,
emissions,
weights,
correlationMatrices,
combstates,
IDs,
fragLen = 50
)
``` |

`bins` |
A |

`transition` |
A matrix with transition probabilities. |

`emissions` |
A list() with data.frames with emission distributions (see |

`weights` |
A list() with weights for the three univariate states. |

`correlationMatrices` |
A list with correlation matrices. |

`combstates` |
A vector with combinatorial states. |

`IDs` |
A character vector with IDs. |

`fragLen` |
Length of the simulated read fragments. |

A `list()`

with entries $bins containing the simulated states and read count, $reads with simulated read coordinates.

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