Man pages for clippda
A package for the clinical proteomic profiling data analysis
| aclinicalProteomicsData-class | Class "aclinicalProteomicsData" |
| aclinicalProteomicsData-methods | S4 method for the aclinicalProteomicsData class |
| betweensampleVariance | A generic function for computing the biological variance and... |
| betweensampleVariance-methods | Methods for Function betweensampleVariance |
| checkNo.replicates | A function to detect disparity in the number of replicates... |
| clippda-package | A package for clinical proteomics profiling data analysis |
| f | A function to compute adjustments for the effct of covariates... |
| fisherInformation | A generic function to compute the heterogeneity correction... |
| fisherInformation-methods | Methods for Function fisherInformation |
| liverdata | A dataframe of the protein expression data, peak information,... |
| liver_pheno | A dataframe of phenotypic information |
| liverRawData | A dataframe of the protein expression data, peak information... |
| mostSimilarTwo | A function which indentifies two columns of a matrix, or... |
| negativeIntensitiesCorrection | A function to correct the data for the negative intensities... |
| phenoDataFrame | A generic function to set classes for the variables in the... |
| pheno_urine | A dataframe of phenotypic information |
| preProcRepeatedPeakData | A function to pre-process repeated raw peak data |
| proteomicsExprsData | A generic fuction to extract duplicate SELDI data from an... |
| proteomicsExprsData-methods | Methods for Function proteomicsExprsData |
| proteomicspData | A function to extract a dataframe of phenotypic information... |
| proteomicspData-methods | Methods for Function proteomicspData |
| replicateCorrelations | A generic function to compute intraclass correlations |
| replicateCorrelations-methods | Methods for Function replicateCorrelations |
| sampleClusteredData | A function to arrange the data in sample-wise pairs |
| sampleSize | A function for sample size calculations |
| sampleSize3DscatterPlots | A function for 3D display of sample size in a multi parameter... |
| sampleSizeContourPlots | A function to construct a grid with contours for calculating... |
| sampleSize-methods | ~~ Methods for Function sampleSize |
| sampleSizeParameters | A generic function to calculate sample size parameters |
| sampleSizeParameters-methods | ~~ Methods for Function sampleSizeParameters |
| sample_technicalVariance | A generic function for computing the technical variance |
| sample_technicalVariance-methods | Methods for Function sample_technicalVariance |
| show-methods | Methods for Function show in Package 'methods' |
| spectrumFilter | A function to filter out samples with conflicting pair-wise... |
| ztwo | A function to compute Z values when there are no covariates... |
| ZvaluescasesVcontrolsPlots | A function for ploting the odds of being a case vs control... |
| ZvaluesfrommultinomPlots | A generic functon to plot Density of Z values from a... |
