aclinicalProteomicsData-class: Class "aclinicalProteomicsData"

In clippda: A package for the clinical proteomic profiling data analysis

Description

This is a class object for the mass spectrometry data sets, which are in the same format as the raw data from the Biomarkers wizard software. It has slots of matrices of raw mass spectrometry and phenotypic data sets, a character variable for the classes of all the covariates in the phenotypic data matrix, a character variable for the covariates of interest, and numeric value for the number of peaks of interest.

Objects from the Class

Objects can be created by calls of the form new("aclinicalProteomicsData", ...).

Slots

rawSELDIdata:

Object of class "matrix"

phenotypicData:

Object of class "matrix"

variableClass:

Object of class "character"

covariates:

Object of class "character"

no.peaks:

Object of class "numeric"

Methods

show:

Display an aclinicalProteomicsData instance.

Author(s)

S Nyangoma

Examples

showClass("aclinicalProteomicsData")

data(liverdata)
data(liver_pheno)

OBJECT = new("aclinicalProteomicsData",
             rawSELDIdata=as.matrix(liverdata),
             phenotypicData=as.matrix(liver_pheno),
             variableClass=c('numeric','factor','factor'),
             no.peaks=53)

show(OBJECT)

clippda documentation built on Nov. 8, 2020, 8:13 p.m.