proteomicspData: A function to extract a dataframe of phenotypic information...
In clippda: A package for the clinical proteomic profiling data analysis

Description Usage Arguments Value Author(s) Examples

This function takes an object of aclinicalProteomicsData class, extracts a matrix of phenotypic data, and converts it to a dataframe with with variables having defined classes.

1	proteomicspData(Data, ...)

`Data`	is an object of `aclinicalProteomicsData` class.
`...`	means other defined arguments. Currently, we have not defined additional arguments.

Returns a dataframe with variables having defined classes.

S Nyangoma

########################################
##### the data
########################################


data(liverdata)

data(liver_pheno)

OBJECT=new("aclinicalProteomicsData")

OBJECT@rawSELDIdata=as.matrix(liverdata)
OBJECT@covariates=c("tumor" ,    "sex")
OBJECT@phenotypicData=as.matrix(liver_pheno)
OBJECT@variableClass=c('numeric','factor','factor')
OBJECT@no.peaks=53

head(proteomicspData(OBJECT))