top_elements_overlap: Overlap of top elements from different metrics
In cola: A Framework for Consensus Partitioning

Description Usage Arguments Details Value Author(s) Examples

Overlap of top elements from different metrics

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top_elements_overlap(object, top_n = round(0.25*length(object[[1]])),
    method = c("euler", "upset", "venn", "correspondance"),
    fill = NULL, ...)

`object`	A list which contains values from different metrics.
`top_n`	Number of top rows.
`method`	`euler`: plot Euler diagram by `euler`; `upset`: draw the Upset plot by `UpSet`; `venn`: plot Venn diagram by `venn`; `correspondance`: use `correspond_between_rankings`.
`fill`	Filled color for the Euler diagram. The value should be a color vector. Transparency of 0.5 are added internally.
`...`	Additional arguments passed to `plot.euler`, `UpSet` or `correspond_between_rankings`.

The i^th value in every vectors in object should correspond to the same element from the original data.

No value is returned.

Zuguang Gu <z.gu@dkfz.de>

require(matrixStats)
set.seed(123)
mat = matrix(rnorm(1000), nrow = 100)
lt = list(sd = rowSds(mat), mad = rowMads(mat))
top_elements_overlap(lt, top_n = 20, method = "euler")
top_elements_overlap(lt, top_n = 20, method = "upset")
top_elements_overlap(lt, top_n = 20, method = "venn")
top_elements_overlap(lt, top_n = 20, method = "correspondance")