top_rows_overlap-ConsensusPartitionList-method: Overlap of top rows from different top-value methods

Description Usage Arguments Value Author(s) See Also Examples

Description

Overlap of top rows from different top-value methods

Usage

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## S4 method for signature 'ConsensusPartitionList'
top_rows_overlap(object, top_n = min(object@list[[1]]@top_n),
    method = c("euler", "upset", "venn", "correspondance"), fill = NULL, ...)

Arguments

object

A ConsensusPartitionList-class object.

top_n

Number of top rows.

method

euler: plot Euler diagram by euler; upset: draw the Upset plot by UpSet; venn: plot Venn diagram by venn; correspondance: use correspond_between_rankings.

fill

Filled color for the Euler diagram. The value should be a color vector. Transparency of 0.5 are added internally.

...

Additional arguments passed to plot.euler, UpSet or correspond_between_rankings.

Value

No value is returned.

Author(s)

Zuguang Gu <z.gu@dkfz.de>

See Also

top_elements_overlap

Examples

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data(golub_cola)
top_rows_overlap(golub_cola, method = "euler")
top_rows_overlap(golub_cola, method = "upset")
top_rows_overlap(golub_cola, method = "venn")
top_rows_overlap(golub_cola, method = "correspondance")

cola documentation built on Nov. 8, 2020, 8:12 p.m.