Files in dupRadar
Assessment of duplication rates in RNA-Seq datasets

NEWS
LICENSE
DESCRIPTION
.BBSoptions
NAMESPACE
inst/CITATION
inst/doc/dupRadar.html
inst/doc/dupRadar.R inst/doc/dupRadar.Rmd
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2.bam
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2_duprm.bam.log
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2.bam.bai
inst/extdata/genes.gtf
inst/extdata/wgEncodeCaltechRnaSeqGm12878R1x75dAlignsRep2V2_duprm.bam
vignettes/dupRadar.Rmd
vignettes/figures/encode.svg
vignettes/figures/GCcontent.svg
vignettes/figures/GCdependence.png
R/duprateExpFit.R R/duprateExpPlot.R R/getBinRpkMean.R R/getBinDuplication.R R/getDupMatBin.R R/duprateExpIdentify.R R/expressionHist.R R/getRpkCumulativeReadCountFraction.R R/getDynamicRange.R R/duprateExpDensPlot.R R/duprateExpBoxplot.R R/readcountExpBoxplot.R R/cumulativeDuprateBarplot.R R/analyzeDuprates.R R/getDupMatStats.R R/dupRadar.R R/markDuplicates.R R/getRpkBinReadCountFraction.R man/getBinRpkMean.Rd man/getDynamicRange.Rd man/dupRadar.Rd man/duprateExpBoxplot.Rd man/picardMarkDuplicates.Rd man/duprateExpDensPlot.Rd man/getDupMatBin.Rd man/getRpkBinReadCountFraction.Rd man/duprateExpIdentify.Rd man/cumulativeDuprateBarplot.Rd man/dm.bad.Rd man/expressionHist.Rd man/markDuplicates.Rd man/readcountExpBoxplot.Rd man/dm.Rd man/getRpkCumulativeReadCountFraction.Rd man/dupRadar_examples.Rd man/getDupMatStats.Rd man/getBinDuplication.Rd man/analyzeDuprates.Rd man/duprateExpPlot.Rd man/duprateExpFit.Rd man/bamutilMarkDuplicates.Rd
build/vignette.rds
data/dupRadar_examples.RData
data/datalist
dupRadar documentation built on Oct. 31, 2019, 3:11 a.m.