getDupMatStats: Report duplication stats on regions

Description Usage Arguments Value Examples

View source: R/getDupMatStats.R

Description

getDupMatStats Report duplication stats based on the data calculated in the duplication matrix

Usage

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Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

Value

A data.frame containing the stats about the number of genes covered (1+ tags) and the number of genes containing duplicates (1+)

Examples

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# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
getDupMatStats(DupMat=dm)

dupRadar documentation built on May 2, 2018, 4:03 a.m.