getDupMatStats: Report duplication stats on regions
In dupRadar: Assessment of duplication rates in RNA-Seq datasets
Description
Usage
Arguments
Value
Examples
View source: R/getDupMatStats.R
Description
getDupMatStats Report duplication stats based on the data calculated
in the duplication matrix
Usage
1
getDupMatStats(DupMat)
Arguments
DupMat
The duplication matrix calculated by analyzeDuprates
Value
A data.frame containing the stats about the number of genes covered
(1+ tags) and the number of genes containing duplicates (1+)
Examples
1
2
3
4
5
6
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# call the plot and identify genes
getDupMatStats(DupMat=dm)
dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.
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Description Usage Arguments Value Examples
View source: R/getDupMatStats.R
Description
getDupMatStats Report duplication stats based on the data calculated
in the duplication matrix
Usage
1 | getDupMatStats(DupMat)
|
Arguments
DupMat |
The duplication matrix calculated by |
Value
A data.frame containing the stats about the number of genes covered (1+ tags) and the number of genes containing duplicates (1+)
Examples
1 2 3 4 5 6 | # dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# call the plot and identify genes
getDupMatStats(DupMat=dm)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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