duprateExpFit: Duplication rate ~ total read count fit model
In dupRadar: Assessment of duplication rates in RNA-Seq datasets
Description
Usage
Arguments
Details
Value
Examples
View source: R/duprateExpFit.R
Description
duprateExpDensPlot Duplication rate ~ total read count fit model
Usage
1
duprateExpFit(DupMat)
Arguments
DupMat
The duplication matrix calculated by analyzeDuprates
Details
Fit a Generalized Linear Model using a logit function between thegene
duplication rate and the total read count.
Value
The GLM and the coefficients of the fitted logit function
Examples
1
2
3
4
5
6
# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# duprate plot
duprateExpFit(DupMat=dm)
dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.
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Description Usage Arguments Details Value Examples
View source: R/duprateExpFit.R
Description
duprateExpDensPlot Duplication rate ~ total read count fit model
Usage
1 | duprateExpFit(DupMat)
|
Arguments
DupMat |
The duplication matrix calculated by |
Details
Fit a Generalized Linear Model using a logit function between thegene duplication rate and the total read count.
Value
The GLM and the coefficients of the fitted logit function
Examples
1 2 3 4 5 6 | # dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)
# duprate plot
duprateExpFit(DupMat=dm)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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