duprateExpIdentify: Identify genes plotted by 'duprateExpPlot'

In dupRadar: Assessment of duplication rates in RNA-Seq datasets

Description

duprateExpIdentify Identify genes plotted by duprateExpPlot

Usage

duprateExpIdentify(DupMat, idCol = "ID")

Arguments

DupMat	The duplication matrix calculated by analyzeDuprates
idCol	The column from the duplication matrix containing the labels

Details

This function makes a barplot showing the cumulative read counts fraction from the duplication matrix calculated by analyzeDuprates.

Value

The identified points. x and y values match the ones from duprateExpPlot

Examples

# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)

# call the plot and identify genes
duprateExpPlot(DupMat=dm)
duprateExpIdentify(DupMat=dm)

Example output

integer(0)

dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.