readcountExpBoxplot: Barplot of percentage of reads falling into expression bins

Description Usage Arguments Details Value Examples

View source: R/readcountExpBoxplot.R

Description

readcountExpBoxplot Barplot of percentage of reads falling into expression bins

Usage

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readcountExpBoxplot(DupMat, stepSize = 0.05, ...)

Arguments

DupMat

The duplication matrix calculated by analyzeDuprates

stepSize

The number of bars to be shown

...

Other parameters sent to barplot()

Details

This function makes a barplot of percentage of reads falling into expression bins

Value

nothing Other parameters sent to barplot()

Examples

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# dm is a duplication matrix calculated by analyzeDuprates:
# R> dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads)
attach(dupRadar_examples)


# barplot of percentage of reads falling into expression bins
readcountExpBoxplot(DupMat=dm)

dupRadar documentation built on Nov. 8, 2020, 5:41 p.m.