Man pages for easyRNASeq
Count summarization and normalization for RNA-Seq data
| basename-methods | Extend the basename function to display Rsamtools BamFile... |
| BiocFileCache-methods | Manages the data necessary for the examples using... |
| DESeq-methods | Extension for the DESeq package |
| easyRNASeq-accessors | Accessors for RNAseq class |
| easyRNASeq-annotation-internal-methods | Internal easyRNASeq annotation methods |
| easyRNASeq-annotation-methods | Get genic annotation from a gff3/gtf file or using biomaRt |
| easyRNASeq-AnnotParam | AnnotParam constructor |
| easyRNASeq-AnnotParam-accessors | Accessors for AnnotParam class |
| easyRNASeq-AnnotParam-class | Class "AnnotParam" |
| easyRNASeq-BamFileList | Get a BamFileList from a list of filenames |
| easyRNASeq-BamParam | BamParam constructor |
| easyRNASeq-BamParam-accessors | Accessors for BamParam class |
| easyRNASeq-BamParam-class | Class "BamParam" |
| easyRNASeq-class | Class "RNAseq" |
| easyRNASeq-correction-methods | easyRNASeq count table correction to RPKM |
| easyRNASeq-coverage-methods | Compute the coverage from a Short Read Alignment file |
| easyRNASeq-datasets | Dataset included in the package |
| easyRNASeq-defunct | The following function are defunct: • 'easyRNASeq' •... |
| easyRNASeq-defunct-annotation-methods | Defunct annotation function |
| easyRNASeq-easyRNASeq | easyRNASeq method |
| easyRNASeq-global-variables | Objects created when the package is attached. |
| easyRNASeq-internal-AnnotParam-methods | Internal methods of AnnotParam objects |
| easyRNASeq-internal-methods | Internal methods of RNAseq objects |
| easyRNASeq-island-methods | Identify expressed regions de-novo |
| easyRNASeq-package | Count summarization and normalization pipeline for Next... |
| easyRNASeq-RnaSeqParam | RnaSeqParam constructor |
| easyRNASeq-RnaSeqParam-accessors | Accessors for RnaSeqParam class |
| easyRNASeq-RnaSeqParam-class | Class "RnaSeqParam" |
| easyRNASeq-simpleRNASeq | simpleRNASeq method |
| easyRNASeq-summarization-internal-methods | Internal count and summarization methods |
| easyRNASeq-summarization-methods | Count methods for RNAseq object |
| easyRNASeq-synthetic-transcripts | Methods to create synthetic transcripts |
| edgeR-methods | Extension for the edgeR package |
| file.exists-methods | Extend the file.exists function to check the path slot of a... |
| genomeIntervals-methods | Extension for the genomeIntervals package |
| GenomicRanges-methods | Extension of the GenomicRanges package |
| IRanges-methods | Extension of the IRanges package |
| parallel-methods | parallel additional methods |
| print-methods | Pretty print the content of classes from the easyRNASeq... |
| Rsamtools-methods | Extension of the Rsamtools package |
| ShortRead-methods | Methods extending the ShortRead package functionalities |
| show-methods | Display the content of classes from the easyRNASeq package. |
