API for exomePeak2
Bias Awared Peak Calling and Quantification for MeRIP-Seq
| Global functions | |
|---|---|
| GC_content_over_grl | Man page Source code |
| GCsizeFactors | Man page |
| GCsizeFactors,SummarizedExomePeak-method | Man page |
| GCsizeFactors-methods | Man page |
| GCsizeFactors<- | Man page |
| GCsizeFactors<-,SummarizedExomePeak-method | Man page |
| GLM_inference | Man page Source code |
| LibraryType | Man page |
| LibraryType,MeripBamFileList-method | Man page |
| LibraryType-methods | Man page |
| MeripBamFileList | Man page |
| MeripBamFileList-class | Man page |
| Parameter | Man page |
| Parameter,MeripBamFileList-method | Man page |
| Parameter-methods | Man page |
| Results | Man page |
| Results,SummarizedExomePeak-method | Man page |
| Results-methods | Man page |
| SummarizedExomePeak | Man page Source code |
| SummarizedExomePeak-class | Man page |
| call_peaks_with_GLM | Man page Source code |
| consDESeq2_DM | Man page Source code |
| consDESeq2_M | Man page Source code |
| convertTxDb | Man page Source code |
| ctest | Man page Source code |
| decision_deseq2 | Man page Source code |
| disj_background | Man page Source code |
| estimateSeqDepth | Man page |
| estimateSeqDepth,SummarizedExomePeak-method | Man page |
| estimateSeqDepth-methods | Man page |
| exomePeak2 | Man page Source code |
| exomePeak2Results | Man page |
| exomePeak2Results,SummarizedExomePeak-method | Man page |
| exomePeak2Results-methods | Man page |
| exomePeak2Results<- | Man page |
| exomePeak2Results<-,SummarizedExomePeak-method | Man page |
| exomePeakCalling | Man page |
| exomePeakCalling,MeripBamFileList-method | Man page |
| exomePeakCalling-methods | Man page |
| exome_bins_from_txdb | Man page Source code |
| exonPlot | Man page Source code |
| exons_by_unique_gene | Man page Source code |
| exportResults | Man page |
| exportResults,SummarizedExomePeak-method | Man page |
| exportResults-methods | Man page |
| flank_on_exons | Man page Source code |
| format_argg | Source code |
| glmDM | Man page |
| glmDM,SummarizedExomePeak-method | Man page |
| glmDM-methods | Man page |
| glmM | Man page |
| glmM,SummarizedExomePeak-method | Man page |
| glmM-methods | Man page |
| mclust_bg | Man page Source code |
| normalizeGC | Man page |
| normalizeGC,SummarizedExomePeak-method | Man page |
| normalizeGC-methods | Man page |
| plotExonLength | Man page |
| plotExonLength,SummarizedExomePeak-method | Man page |
| plotExonLength-methods | Man page |
| plotLfcGC | Man page |
| plotLfcGC,SummarizedExomePeak-method | Man page |
| plotLfcGC-methods | Man page |
| plotReadsGC | Man page |
| plotReadsGC,SummarizedExomePeak-method | Man page |
| plotReadsGC-methods | Man page |
| plotSizeFactors | Man page |
| plotSizeFactors,SummarizedExomePeak-method | Man page |
| plotSizeFactors-methods | Man page |
| quiet | Man page Source code |
| reads_five_POS | Man page Source code |
| reads_five_POS_rev | Man page Source code |
| reduce_peaks | Man page Source code |
| remove_introns | Man page Source code |
| replace_bg | Man page Source code |
| scanMeripBAM | Man page Source code |
| split_by_name | Man page Source code |
