cmap-data: Example reference datasets
In gCMAPWeb: A web interface for gene-set enrichment analyses
Description
Five example reference datasets containing simulated data to demonstrate the
functionality of the gCMAPWeb package. These objects were generated with the
exampleCMAP function using different seeds.
Format
cmap1 to 4 are NChannelSet objects each with 1000 simulated z-scores for 10 samples. cmap5 is a CMAPCollection with membership information about 1000 genes and 10 gene sets.
Details
cmap1, cmap2, cmap3 and cmap5 contain data for 1000 human Entrez identifiers.
cmap1, cmap2 and cmap3 are NChannelSet objects with one channel, the 'z' AssayDataElement.
cmap4 is an NChannelSet with data for 1000 mouse Entrez identifiers in the 'z' and 'log_fc' channels.
cmap5 is a codeCMAPCollection.
gCMAPWeb documentation built on April 28, 2020, 8:23 p.m.
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Description
Five example reference datasets containing simulated data to demonstrate the
functionality of the gCMAPWeb package. These objects were generated with the
exampleCMAP function using different seeds.
Format
cmap1 to 4 are NChannelSet objects each with 1000 simulated z-scores for 10 samples. cmap5 is a CMAPCollection with membership information about 1000 genes and 10 gene sets.
Details
cmap1, cmap2, cmap3 and cmap5 contain data for 1000 human Entrez identifiers.
cmap1, cmap2 and cmap3 are NChannelSet objects with one channel, the 'z' AssayDataElement.
cmap4 is an NChannelSet with data for 1000 mouse Entrez identifiers in the 'z' and 'log_fc' channels.
cmap5 is a codeCMAPCollection.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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