convert_gene_identifiers: Entrez mapper
In gCMAPWeb: A web interface for gene-set enrichment analyses

This function maps the submitted gene identifiers to Entrez identifiers and returns a translation table with the original and mapped ids

1	convert_gene_identifiers(gene.ids, query.IdType, species)

`gene.ids`	Character vector with gene ids
`query.IdType`	A GeneIdentifierType object
`species`	String identifying the species, will be inserted into a new EntrezIdentifier object and returned with the translated results

A list with the following elements

gene.ids, a character vector of unique EntrezIds
query.IdType, an EntrezIdentifier object with the species
conversion, a list containing the full translation table and a summary message
original.ids, a character vector of the submitted ids corresponding to the returned EntrezIds

Thomas Sandmann

gCMAPWeb documentation built on April 28, 2020, 8:23 p.m.