Files in gCMAPWeb
A web interface for gene-set enrichment analyses

.BBSoptions
DESCRIPTION
NAMESPACE
R
R/AllGenerics.R R/cmap.R R/cmapAnalysis.R R/cmapHeatmap.R R/cmapRun-methods.R R/createObject.R R/example_objects.R R/file_io.R R/gCMAPWeb-package.R R/html_elements.R R/plotting_functions.R R/reporting.R
build
build/vignette.rds
data
data/cmap1.rdata
data/cmap2.rdata
data/cmap3.rdata
data/cmap4.rdata
data/cmap5.rdata
inst
inst/CITATION
inst/NEWS.Rd
inst/config
inst/config/config.yml
inst/config/options.txt
inst/config/rapache
inst/config/rapache/gCMAP_app.R
inst/config/rapache/httpd.conf
inst/config/rapache/rapache_config.R
inst/doc
inst/doc/gCMAPWeb.R
inst/doc/gCMAPWeb.Rnw
inst/doc/gCMAPWeb.pdf inst/doc/referenceDatasets.R
inst/doc/referenceDatasets.Rnw
inst/doc/referenceDatasets.pdf
inst/extdata
inst/extdata/profile_entrez_hs.txt
inst/htdocs
inst/htdocs/brew
inst/htdocs/brew/body_first.html
inst/htdocs/brew/help.md.txt
inst/htdocs/brew/profile_details.html
inst/htdocs/brew/signed_geneset_details.html
inst/htdocs/brew/single_gene_details.html
inst/htdocs/brew/unsigned_geneset_details.html
inst/htdocs/css
inst/htdocs/css/DT_bootstrap.css
inst/htdocs/css/bootstrap-responsive.min.css
inst/htdocs/css/bootstrap.cerulean.min.css
inst/htdocs/css/bootstrap.min.css
inst/htdocs/css/bootstrap.unity.min.css
inst/htdocs/favicon.ico
inst/htdocs/gcmap_analysis.rhtml
inst/htdocs/help.html
inst/htdocs/img
inst/htdocs/img/gene_level_results_pie.png
inst/htdocs/img/gene_level_results_profile.png
inst/htdocs/img/gene_level_results_signed.png
inst/htdocs/img/gene_level_results_unsigned.png
inst/htdocs/img/glyphicons-halflings-white.png
inst/htdocs/img/glyphicons-halflings.png
inst/htdocs/img/index.png
inst/htdocs/img/profile_input.png
inst/htdocs/img/set_level_results.png
inst/htdocs/img/signed_input.png
inst/htdocs/img/sort_asc.png
inst/htdocs/img/sort_asc_disabled.png
inst/htdocs/img/sort_both.png
inst/htdocs/img/sort_desc.png
inst/htdocs/img/sort_desc_disabled.png
inst/htdocs/img/unsigned_input.png
inst/htdocs/index.rhtml
inst/htdocs/input_form_elements.tmp
inst/htdocs/js
inst/htdocs/js/DT_bootstrap.js
inst/htdocs/js/bootstrap.min.js
inst/htdocs/js/gCMAPWeb.js
inst/htdocs/js/jquery-1.8.2.min.js
inst/htdocs/js/jquery.dataTables.min.js
inst/htdocs/js/jquery.dataTables.plugins.js
inst/htdocs/js/jquery.validate.min.js
inst/htdocs/js/underscore-min.js
inst/htdocs/maintenance.html.inactive
inst/htdocs/profile_input.rhtml
inst/htdocs/set_input.rhtml
inst/htdocs/signed_input.rhtml
inst/htdocs/single_input.rhtml
inst/unitTests
inst/unitTests/test_all.R
man
man/addLinks.Rd man/add_geneScores_to_df.Rd man/body_first.Rd man/cmap-data.Rd man/cmapAnalysis.Rd man/cmapHeatmap.Rd man/cmapRun-methods.Rd man/conversion_html.Rd man/convert_gene_identifiers.Rd man/create_GeneIdentifierType.Rd man/create_GeneSet.Rd man/create_SignedGeneSet.Rd man/create_figure_legend.Rd man/create_gene_report.Rd man/create_gene_table_legend.Rd man/create_heatmap_legend.Rd man/create_legend.Rd man/create_overview_legend.Rd man/create_overview_plot.Rd man/create_profile_ExpressionSet.Rd man/create_query_objects.Rd man/create_tab.Rd man/create_zip.Rd man/entrez_GeneSets.Rd man/exampleCMAP.Rd man/examplePost.Rd man/gCMAPWeb-package.Rd man/gCMAPWeb.Rd man/gene_density_chart_legend.Rd man/gene_density_profile_legend.Rd man/gene_pie_chart_legend.Rd man/generate_report.Rd man/hide_species_js.Rd man/html_body_last.Rd man/html_header.Rd man/html_table.Rd man/identifier_radio_html.Rd man/index_message.Rd man/index_quote.Rd man/index_subtitle.Rd man/index_text.Rd man/index_title.Rd man/inputType_buttons.Rd man/load_cmaps.Rd man/parse_file_input.Rd man/parse_request.Rd man/parse_textarea_input.Rd man/platform_radio_html.Rd man/process_score_input.Rd man/profile_input_example.Rd man/read_config_file.Rd man/reference_radio_html.Rd man/retrieve_annotation.Rd man/signed_input_example.Rd man/single_input_example.Rd man/species_radio_html.Rd man/stripPrefix.Rd man/unsigned_input_example.Rd man/validate_config_file.Rd man/validate_request.Rd
tests
tests/runTests.R
vignettes
vignettes/esetSlots.png
vignettes/exampleQuery.png
vignettes/gCMAPWeb.Rnw
vignettes/geneLevelPlot.png
vignettes/indexOptions.png
vignettes/referenceDatasets.Rnw
vignettes/setLevelPlot.png
vignettes/tutorial.pdf
gCMAPWeb documentation built on May 31, 2017, 11:34 a.m.