cmapAnalysis: Function controlling the gCMAP analysis workflow

In gCMAPWeb: A web interface for gene-set enrichment analyses

Description

This function controls the gCMAPWeb analysis workflow

Usage

cmapAnalysis(req, conf_data, reference.cmaps, element = getOption("element",
  default = "z"), save.intermediates = getOption("save.intermediates", default
  = FALSE))

Arguments

req	a Rook Request object
conf_data	list, the configuration data as returned by the read_config_file function
reference.cmaps	list, containing the reference database eSet objects
element	character, identifying the elementName of the channel extracted from NChannelSet objects
save.intermediates	logical, if TRUE rdata files of intermediate results will be stored in the temporary directory for debugging

Value

a list with three elements: conversion, reports and tmp_filename

Author(s)

Thomas Sandmann

gCMAPWeb documentation built on April 28, 2020, 8:23 p.m.