Man pages for genArise
Microarray Analysis tool
| a.arise | A Arise |
| alter.unique | Remove Duplicates |
| analysis.window | Analysis.window |
| annotations | Gene Annotations |
| back.gui | Return to the last window |
| bg.correct | Background Correction |
| classes | Classes Defined by this Package |
| create.project | Create directorie for the project and its results and... |
| cys.plot | Data Visualization: log2(Cy3) vs log2(Cy5) |
| DataSet-class | DataSet - class |
| filter.spot | Intensity-based filtering of array elements |
| genArise | GUI: Graphical User Interface |
| genArise.init | genArise.init |
| genMerge | genMerge: Post-Genomic Analysis |
| get.values | Auxiliar function for post-analysis |
| get.Zscore | Swap from Files |
| global.norm | Global Normalization of Spot |
| graphic.choose | Graphic choose |
| grid.norm | Normalization by grid of Spot |
| help | Help of genArise |
| i.arise | I Arise |
| imageLimma | Image Plot of Microarray |
| make.swap | Swap analysis |
| ma.plot | Data Visualization: M vs. A plot |
| m.arise | M Arise |
| meanUnique | Remove Duplicates |
| note | note |
| old.project | Open previous project |
| post.analysis | Set-combinatorial analysis |
| principal | Principal window of genAriseGUI |
| projects.select | File selector |
| r.arise | Get R value |
| read.dataset | Read Dataset from File |
| read.spot | Read Spot from File |
| reset.history | Reset the prj history file |
| ri.plot | Data Visualization: R vs I |
| set.grid.properties | set.grid.properties |
| set.history.project | Save the history of a project |
| set.path.project | set.path.project |
| set.project.properties | set.project.properties |
| Simon | Dataset: Little fragment of a microarray from IFC UNAM |
| single.norm | Swap from Files |
| Spot-class | Spot - class |
| spotUnique | Replicate filtering |
| swap.select | Dye swap files selector |
| trim | Trim |
| write.dataSet | Write dataSet |
| write.spot | Write Spot |
| write.zscore | Write Z-score data |
| WT.dataset | Microarray from the IFC |
| Zscore | Z-scores for identifying differential expression |
| Zscore.plot | Z-score Data Visualization: R vs I or M vs A |
| Zscore.points | Z-score Window |
