Zscore.plot: Z-score Data Visualization: R vs I or M vs A

Description Usage Arguments See Also Examples

View source: R/plot.R

Description

This function allows to plot R-values vs I-values or M-values vs A-values for identifying differential expression.

Usage

1
Zscore.plot(dataSet.spot, Zscore.min, Zscore.max, all, col)

Arguments

dataSet.spot

Spot Object

Zscore.min

The lower value in a range, if Zscore.min = NULL then the file will contain all values bellow Zscore.max

Zscore.max

The greater value in a range, if Zscore.max = NULL then file will be contain all values above Zscore.min. Both values, Zscore.min and Zscore.max can not be NULL

all

Plot all the observations in four sets: Z < 1, 1 < Z < 1.5, 1.5 < Z < 2, Z > 2

col

Color in which the pioints of the plot will be shown where only the points from center are plot. This argument must be quoted and the possible values it can take are the same from the colors function in the R base package.

See Also

colors()

Examples

1
2
data(WT.dataset)
Zscore.plot(WT.dataset, Zscore.min = 1, Zscore.max = 2)

genArise documentation built on Nov. 17, 2017, 9:54 a.m.