genotype.snp: SNP genotype dataset

In genphen: A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning

Description

The genotype.snp data is a character matrix with dimensions 51x100. It contains 100 SNPs across 51 mouse strains, taken from the publicly available Mouse Hapmap data. We used it in combination with the phenotype.snp data to compute the association between each SNP and the phenotype data.

Usage

data(genotype.snp)

Format

A matrix with 51 observations (laboratory mouse strains) and 100 variables (SNPs).

Value

Matrix with 51 rows and 100 columns, whereby each column is a SNP, and the elements represent an alleles (nucleotides).

Source

http://mouse.cs.ucla.edu/mousehapmap/emma.html

Examples

data(genotype.snp)

Example output

Loading required package: randomForest
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genphen documentation built on Nov. 8, 2020, 5:03 p.m.