genotype.snp.msa: SNP genotype dataset (msa)

Description Usage Format Value Source Examples

Description

The genotype.snp.msa data is a multiple sequence alignment in Biostrings DNAMultipleAlignment format. It contains 51 DNA sequences, each with 100 sites (SNPs), taken from the publicly available Mouse Hapmap data. We used it in combination with the phenotype.snp data to compute the association between each SNP and the phenotype data.

Usage

1
data("genotype.snp.msa")

Format

DNAMultipleAlignment object with 51 sequences each made of 100 nucleotides (SNPs).

Value

DNAMultipleAlignment object with 51 sequences each made of 100 nucleotides (SNPs).

Source

http://mouse.cs.ucla.edu/mousehapmap/emma.html

Examples

1
data("genotype.snp.msa")

genphen documentation built on May 20, 2017, 10:42 p.m.

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