basicProfile | Builds basic functional profile |
CD4ids | Entrez identifiers for CD4-TCells example |
clustKidneyMF2 | Ready 2 cluster equivalence distance matrix obtained from the... |
compareGeneLists | Compares two lists of genes by building (expanded) profiles... |
compareGOProfiles | Comparison of lists of genes through their functional... |
compareProfilesLists | Compares two of expanded profiles |
compSummary | This function returns a brief summary of the comparison... |
contractedProfile | Converts an expanded GO profile into a basic (contracted) GO... |
conversionFunctions | Functions to transformconvert objects between different types |
drosophila | Entrez identifiers for genes related with an eye mutation in... |
equivalentGOProfiles | Are two lists of genes equivalent in terms of their Gene... |
equivClust | For a given level (2, 3, ...) in a GO ontology (BP, MF or... |
equivClust2pdf | Save the graphical representation of objects of class... |
equivSummary | This function returns a brief summary of the equivalence test... |
expandedLevel | Function to create expanded levels which can contain GO Terms... |
expandedProfile | Builds expanded profiles |
fisherGOProfiles | GO Class-by-class Fisher tests in lists of genes... |
fitGOProfile | Does a "sample" GO profile 'pn', observed in a sample of 'n'... |
goProfiles-package | Performs Gene Ontology based analysis using Functional... |
GOTermsList | Functions to create and manage lists of GO terms associated... |
hugoIds | Entrez Identifiers obtained from the Human Genome... |
iterEquivClust | For each combination of the specified levels in the choosen... |
kidneyGeneLists | Gene-lists related to kidney transplantation rejection |
mergeProfilesLists | Combines two lists of profiles into one |
ngenes | Returns the number of genes that lead to this GO profile (an... |
omimIds | Entrez identifiers for disease-related genes in the OMIM... |
plotProfiles | Plot functional profiles |
printProfiles | Print functional profiles |
prostateIds | Prostate cancer-related genes |
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