API for groHMM
GRO-seq Analysis Pipeline
| Global functions | |
|---|---|
| RgammaMLE | Man page Source code |
| Rnorm | Man page Source code |
| Rnorm.exp | Man page Source code |
| approx.ratio.CI | Source code |
| approx.ratios.CI | Source code |
| averagePlot | Man page Source code |
| breakInterval | Source code |
| breakTranscriptsOnGenes | Man page Source code |
| combineTranscripts | Man page Source code |
| countMappableReadsInInterval | Man page Source code |
| countMappableReadsInInterval_foreachChrom | Source code |
| detectTranscripts | Man page Source code |
| evaluateHMMInAnnotations | Man page |
| expressedGenes | Man page Source code |
| expressedGenes_foreachChrom | Source code |
| getCores | Man page Source code |
| getTxDensity | Man page Source code |
| groHMM | Man page |
| groHMM-package | Man page |
| limitToXkb | Man page Source code |
| makeConsensusAnnotations | Man page Source code |
| metaGene | Man page Source code |
| metaGeneMatrix | Man page Source code |
| metaGeneMatrix_foreachChrom | Source code |
| metaGene_foreachChrom | Source code |
| metaGene_nL | Man page Source code |
| pausingIndex | Man page Source code |
| pausingIndex_foreachChrom | Source code |
| plot2Ranges | Source code |
| polymeraseWave | Man page Source code |
| readBed | Man page Source code |
| removeRedundant | Source code |
| runMetaGene | Man page Source code |
| samplingMetaGene | Source code |
| tlsDeming | Man page Source code |
| tlsLoess | Man page Source code |
| tlsSvd | Man page Source code |
| weighted.var | Source code |
| windowAnalysis | Man page Source code |
| writeWiggle | Man page Source code |
