API for groHMM
GRO-seq Analysis Pipeline

Global functions
RgammaMLE Man page Source code
Rnorm Man page Source code
Rnorm.exp Man page Source code
approx.ratio.CI Source code
approx.ratios.CI Source code
averagePlot Man page Source code
breakInterval Source code
breakTranscriptsOnGenes Man page Source code
combineTranscripts Man page Source code
countMappableReadsInInterval Man page Source code
countMappableReadsInInterval_foreachChrom Source code
detectTranscripts Man page Source code
evaluateHMMInAnnotations Man page Source code
expressedGenes Man page Source code
expressedGenes_foreachChrom Source code
getCores Man page Source code
getLIValue Source code
getLIValues Source code
getTxDensity Man page Source code
getWP Source code
groHMM Man page
groHMM-package Man page
limitToXkb Man page Source code
makeConsensusAnnotations Man page Source code
metaGene Man page Source code
metaGeneMatrix Man page Source code
metaGeneMatrix_foreachChrom Source code
metaGene_foreachChrom Source code
metaGene_nL Man page Source code
pausingIndex Man page Source code
pausingIndex_foreachChrom Source code
plot2Ranges Source code
polymeraseWave Man page Source code
readBed Man page Source code
removeRedundant Source code
runMetaGene Man page Source code
samplingMetaGene Source code
tlsDeming Man page Source code
tlsLoess Man page Source code
tlsSvd Man page Source code
weighted.var Source code
windowAnalysis Man page Source code
writeWiggle Man page Source code
groHMM documentation built on May 31, 2017, 11:20 a.m.