Files in groHMM
GRO-seq Analysis Pipeline
NAMESPACE
DESCRIPTION
build/vignette.rds
src/hmmMiscFunctions.c
src/DecayAlgorithm.c
src/Windowing.c
src/MLEfit.c
src/RegisterRRoutines.c
src/hmmHeader.h
src/hmmViterbi.c
src/hmmFwBw.c
src/AnnotateProbes.c
src/hmmEM.c
src/UsefulValues.h
R/metaGene.R
R/polymeraseWave.R
R/windowAnalysis.R
R/detectTranscripts.R
R/tlsFits.R
R/fitDistributions.R
R/limitToXkb.R
R/getTxDensity.R
R/breakTranscriptsOnGenes.R
R/pausingIndex.R
R/writeWiggle.R
R/makeConsensusAnnotations.R
R/zzz.R
R/expressedGenes.R
vignettes/GROseqHMM.png
vignettes/groHMM.Rnw
vignettes/groHMM.bib
vignettes/GROseqData.png
man/runMetaGene.Rd
man/tlsDeming.Rd
man/breakTranscriptsOnGenes.Rd
man/tlsSvd.Rd
man/detectTranscripts.Rd
man/metaGeneMatrix.Rd
man/tlsLoess.Rd
man/expressedGenes.Rd
man/makeConsensusAnnotations.Rd
man/countMappableReadsInInterval.Rd
man/pausingIndex.Rd
man/limitToXkb.Rd
man/metaGene_nL.Rd
man/averagePlot.Rd
man/metaGene.Rd
man/RgammaMLE.Rd
man/readBed.Rd
man/getTxDensity.Rd
man/windowAnalysis.Rd
man/Rnorm.exp.Rd
man/Rnorm.Rd
man/groHMM-package.Rd
man/evaluateHMMInAnnotations.Rd
man/writeWiggle.Rd
man/combineTranscripts.Rd
man/getCores.Rd
man/polymeraseWave.Rd
inst/NEWS
inst/CITATION
inst/doc/groHMM.pdf
inst/doc/groHMM.Rnw
inst/doc/groHMM.R
inst/extdata/S40mR1.bam
inst/extdata/Vignette.RData
inst/extdata/S0mR1.bam
