metaGene_nL: Returns a histogram of the number of reads in each section of a moving window of #' variable size across genes.

Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

1
metaGene_nL(features, reads, n_windows = 1000, debug = FALSE, ...)

Arguments

features

A GRanges object representing a set of genomic coordinates.

reads

A GRanges object representing a set of mapped reads.

n_windows

The number of windows to break genes into.

debug

If set to TRUE, provides additional print options. Default: FALSE

...

Extra argument passed to mclapply

Value

Returns a vector representing the 'typical' signal across genes of different length.

Author(s)

Charles G. Danko and Minho Chae


Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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