metaGene_nL: Returns a histogram of the number of reads in each section of...

Description Usage Arguments Value Author(s)

View source: R/metaGene.R

Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

1
metaGene_nL(features, reads, n_windows = 1000, debug = FALSE, ...)

Arguments

features

A GRanges object representing a set of genomic coordinates.

reads

A GRanges object representing a set of mapped reads.

n_windows

The number of windows to break genes into.

debug

If set to TRUE, provides additional print options. Default: FALSE

...

Extra argument passed to mclapply

Value

Returns a vector representing the 'typical' signal across genes of different length.

Author(s)

Charles G. Danko and Minho Chae


groHMM documentation built on Nov. 8, 2020, 8:09 p.m.