averagePlot: Returns the average profile of tiling array probe intensity...

Description Usage Arguments Value Author(s)

Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

1
averagePlot(ProbeData, Peaks, size = 50, bins = seq(-1000, 1000, size))

Arguments

ProbeData

Data.frame representing chromosome, window center, and a value.

Peaks

Data.frame representing chromosome, and window center.

size

Numeric. The size of the moving window. Default: 50 bp.

bins

The bins of the meta gene – i.e. the number of moving windows to break it into. Default +/- 1kb from center.

Value

A vector representing the 'typical' signal centered on the peaks of interest.

Author(s)

Charles G. Danko and Minho Chae



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