averagePlot: Returns the average profile of tiling array probe intensity values or wiggle-like count data centered on a set of genomic positions (specified by 'Peaks').

Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

1
averagePlot(ProbeData, Peaks, size = 50, bins = seq(-1000, 1000, size))

Arguments

ProbeData

Data.frame representing chromosome, window center, and a value.

Peaks

Data.frame representing chromosome, and window center.

size

Numeric. The size of the moving window. Default: 50 bp.

bins

The bins of the meta gene – i.e. the number of moving windows to break it into. Default +/- 1kb from center.

Value

A vector representing the 'typical' signal centered on the peaks of interest.

Author(s)

Charles G. Danko and Minho Chae


Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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