countMappableReadsInInterval: countMappableReadsInInterval counts the number of mappable...

In groHMM: GRO-seq Analysis Pipeline

Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

countMappableReadsInInterval(features, UnMap, debug = FALSE, ...)

Arguments

features	A GRanges object representing a set of genomic coordinates. The meta-plot will be centered on the start position.
UnMap	List object representing the position of un-mappable reads. Default: not used.
debug	If set to TRUE, provides additional print options. Default: FALSE
...	Extra argument passed to mclapply

Value

Returns a vector of counts, each representing the number of reads inside each genomic interval.

Author(s)

Charles G. Danko and Minho Chae

groHMM documentation built on Nov. 8, 2020, 8:09 p.m.