countMappableReadsInInterval counts the number of mappable reads in a set of genomic features.

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Description

Supports parallel processing using mclapply in the 'parallel' package. To change the number of processors, use the argument 'mc.cores'.

Usage

1

Arguments

features

A GRanges object representing a set of genomic coordinates. The meta-plot will be centered on the start position.

UnMap

List object representing the position of un-mappable reads. Default: not used.

debug

If set to TRUE, provides additional print options. Default: FALSE

...

Extra argument passed to mclapply

Value

Returns a vector of counts, each representing the number of reads inside each genomic interval.

Author(s)

Charles G. Danko and Minho Chae

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