readBed Returns a GenomicRanges object constrcuted from the specified bed file.

Description

Bed file format is assumed to be either four column: seqnames, start, end, strand columns; or six column: seqnames, start, end, name, score, and strand. Three column format is also possible when there is no strand information.

Usage

1

Arguments

file

Path to the input file.

...

Extra argument passed to read.table

Details

Any additional arguments availiable to read.table can be specified.

Value

Returns GRanges object representing mapped reads.

Author(s)

Minho Chae and Charles G. Danko.

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